CDS

Accession Number TCMCG057C31278
gbkey CDS
Protein Id XP_018440843.1
Location complement(join(5993963..5994160,5994251..5994380,5994601..5994707,5994791..5994884,5994965..5995161,5995365..5995436,5995539..5995653,5995856..5995972,5996063..5996154,5996242..5996418,5996519..5996593,5996704..5996844,5996957..5997145,5997407..5997472,5997580..5997730,5997963..5998031,5998205..5998353,5998437..5998568,5998665..5998990,5999116..5999152,5999260..5999314,5999385..5999446,5999548..5999568,5999911..5999913))
Gene LOC108812939
GeneID 108812939
Organism Raphanus sativus

Protein

Length 924aa
Molecule type protein
Topology linear
Data_file_division PLN
dblink BioProject:PRJNA344915
db_source XM_018585341.1
Definition PREDICTED: coatomer subunit beta'-3 isoform X1 [Raphanus sativus]

EGGNOG-MAPPER Annotation

COG_category U
Description The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins
KEGG_TC -
KEGG_Module -
KEGG_Reaction -
KEGG_rclass -
BRITE ko00000        [VIEW IN KEGG]
ko04131        [VIEW IN KEGG]
ko04147        [VIEW IN KEGG]
KEGG_ko ko:K17302        [VIEW IN KEGG]
EC -
KEGG_Pathway -
GOs GO:0005575        [VIEW IN EMBL-EBI]
GO:0005622        [VIEW IN EMBL-EBI]
GO:0005623        [VIEW IN EMBL-EBI]
GO:0005737        [VIEW IN EMBL-EBI]
GO:0005794        [VIEW IN EMBL-EBI]
GO:0005798        [VIEW IN EMBL-EBI]
GO:0006810        [VIEW IN EMBL-EBI]
GO:0006886        [VIEW IN EMBL-EBI]
GO:0006888        [VIEW IN EMBL-EBI]
GO:0006890        [VIEW IN EMBL-EBI]
GO:0006891        [VIEW IN EMBL-EBI]
GO:0008104        [VIEW IN EMBL-EBI]
GO:0008150        [VIEW IN EMBL-EBI]
GO:0012505        [VIEW IN EMBL-EBI]
GO:0012506        [VIEW IN EMBL-EBI]
GO:0015031        [VIEW IN EMBL-EBI]
GO:0015833        [VIEW IN EMBL-EBI]
GO:0016020        [VIEW IN EMBL-EBI]
GO:0016192        [VIEW IN EMBL-EBI]
GO:0030117        [VIEW IN EMBL-EBI]
GO:0030120        [VIEW IN EMBL-EBI]
GO:0030126        [VIEW IN EMBL-EBI]
GO:0030135        [VIEW IN EMBL-EBI]
GO:0030137        [VIEW IN EMBL-EBI]
GO:0030659        [VIEW IN EMBL-EBI]
GO:0030660        [VIEW IN EMBL-EBI]
GO:0030662        [VIEW IN EMBL-EBI]
GO:0030663        [VIEW IN EMBL-EBI]
GO:0031090        [VIEW IN EMBL-EBI]
GO:0031410        [VIEW IN EMBL-EBI]
GO:0031982        [VIEW IN EMBL-EBI]
GO:0032991        [VIEW IN EMBL-EBI]
GO:0033036        [VIEW IN EMBL-EBI]
GO:0034613        [VIEW IN EMBL-EBI]
GO:0042886        [VIEW IN EMBL-EBI]
GO:0043226        [VIEW IN EMBL-EBI]
GO:0043227        [VIEW IN EMBL-EBI]
GO:0043229        [VIEW IN EMBL-EBI]
GO:0043231        [VIEW IN EMBL-EBI]
GO:0044422        [VIEW IN EMBL-EBI]
GO:0044424        [VIEW IN EMBL-EBI]
GO:0044425        [VIEW IN EMBL-EBI]
GO:0044431        [VIEW IN EMBL-EBI]
GO:0044433        [VIEW IN EMBL-EBI]
GO:0044444        [VIEW IN EMBL-EBI]
GO:0044446        [VIEW IN EMBL-EBI]
GO:0044464        [VIEW IN EMBL-EBI]
GO:0045184        [VIEW IN EMBL-EBI]
GO:0046907        [VIEW IN EMBL-EBI]
GO:0048193        [VIEW IN EMBL-EBI]
GO:0048475        [VIEW IN EMBL-EBI]
GO:0051179        [VIEW IN EMBL-EBI]
GO:0051234        [VIEW IN EMBL-EBI]
GO:0051641        [VIEW IN EMBL-EBI]
GO:0051649        [VIEW IN EMBL-EBI]
GO:0070727        [VIEW IN EMBL-EBI]
GO:0071702        [VIEW IN EMBL-EBI]
GO:0071705        [VIEW IN EMBL-EBI]
GO:0097708        [VIEW IN EMBL-EBI]
GO:0098588        [VIEW IN EMBL-EBI]
GO:0098796        [VIEW IN EMBL-EBI]
GO:0098805        [VIEW IN EMBL-EBI]

Sequence

CDS:  
ATGCCTCTCAGTCTCGATATCAAGAGGAAATTTGCTCAACGATCTGAGAGAGTCAAATCTGTGGATCTGCATCCTACAGAACCATGGATTCTAGCAAGTTTGTATTCTGGAACCTTGTGTATTTGGAACTACCAAACGCAGGTGATAACAAAGTCCTTCGAGGTGACTGATGTGCCAGTTAGGTCGGCCAAGTTTATCCCACGCAAGCAATGGGTTGTGGCAGGGGCGGATGATTTGCACATCCGTGTGTACAACTACAATACAATGGACAAGGTTAAAGTTTTCGAGGCTCACTCGGATTACATTAGGTGTGTTGCTGTCCATCCCACCCTTCCGTATGTGCTGTCATCTTCTGATGACATGCTCATAAAGCTTTGGGACTGGGAAAACGGTTGGGCTTGTACTCAGATATTTGAGGGACACTCGCATTATGTGATGCAAGTGGTATTTAACCCAAAAGACACCAACACTTTTGCCAGTGCATCGCTTGACCGTTCCATAAAGATATGGAATCTTGGTTCCCCAGACCCAAATTTTACACTGGATGCTCATCAGAAAGGAGTCAACTGCGTAGATTACTTTACGGGGGGTGATAAGCCCTATTTAATTACTGGCTCTGATGACCATACTGCTAAGGTATGGGACTATCAAACCAAAAGTTGTGTCCAGACGCTAGACGGGCATACCCACAATGTATCTGCAGTATGTTTCCATCCGGAGCTTCCAATAATACTCACAGGTTCTGAGGATGGCACTGTTCGCATTTGGCACGCCACGACTTACAGGCTAGAGAACACACTGAATTATGCCCTCGATCGAGTTTGGGCCATTGGTTACATAAAAAGTTCGCGCCGGGTTGTGATTGGATATGATGAAGGAACCATCATGGTTAAACTTGGACGAGAAATTCCTGTCGCTAGCATGGACAGTAGCGGAAAAATTATATGGGCTAAGCATAATGAAATCCAAACGGCAAACATCAAAAGTCTCGGTGCAGGTTATGAGGTTACTGACGGAGAAAGACTTCCCTTGGCTGTTAAAGACCTGGGGACATGTGATCTTTATCCACAAAGCTTGAAGCACAATCCTAACGCGAGGTTTGTCGTAGTCTGCGGTGATGGAGAGTACATAATCTACACAGCTTTGGCTTGGAGAAATAGATCTTTCGGTTCTGGACTTGAATTTGTTTGGTCATCGGAGGGAGAATGTGCAGTTCGAGAAAGCTCGTCAAAGATAAAGATATTCAGTAAAAATTTCCAGGAAAGGAAGAGTATTCGGCCTACTTTCTCAGCTGAGAAGATTTTCGGAGGAACCCTGTTAGCAATGTGTTCAAATGATTTCATTTGCTTCTATGATTGGGCTGAATGTAGGCTGATTCAGCAAATCGATGTCGCAGTAAAGAATGTTTATTGGGCTGAAAGTGGTGATTTAGTAGCCATTGCTAGTGATACGTCATTCTACATCCTGAAGTACAATCGTGACTTGGTTTCCTCACATTTTGATAGTGGAAGACCAAGTGATGAAGAAGGTGTTGAGGATGCTTTTGAGGTCATCCATGAGAATGATGAACGTGTTAGGACAGGTATATGGGTAGGGGATTGCTTCATTTACAACAACTCTTCTTCGAAGCTTAACTATTGTGTTGGAGGCGAGGTAACCACAATGTATCATTTGGACCGTCCAATGTATTTGTTAGGCTATATTGCCAATCAGAGCCGGGTATACTTGGTAGACAAAGAATTCAATGTCATAGGATATACCCTGCTGCTTAGCCTGATTGAATACAAGACACTTGTTATGCGAGGTGATTTGGATAAAGCCAATGAAATCTTACCTACAATTCCAAAAGAGCAGCATAACAATGTCGCTCATTTCTTGGAGTCTCGGGGAATGATTGAAGATGCTTTAGAAATTGCGACAGATGCTGACTACAGATTTGAACTAGCCATACAGTTGGGTAGACTTGAGATTGCAAAGGAAATCGCTGAAGAAGTGCAGAGTGAGTCTAAATGGAAGCAGTTAGGAGAGTTAGCCATGTCTTCTGGGAAGCTGCAACTGGCCGAGGATTGCATGAAGTACGCTGTGGATTTAAGTGGTTTGCTACTACTATACTCTTCCTTGGGAGATGCTGAAGGGGTGTCAAAACTTGCATGCCTTGCCAAGGAGCAAGGAAAGAACAATGTCGCCTTTCTTTGCTTATTCATGCTGGGTAGATTGGAAGATTGTCTGCAATTATTGGTGGAGAGCAACCGGATACCAGAAGCTGCTCTGATGGCACGTTCTTATCTTCCAAGCAAAGTTTCAGAGATAGTTGCTCTTTGGAGGAAAGATCTCAGCAAGGTTAATTCGAAAGCAGCAGAATCTTTGGCTGATCCTGAAGAGTACCCAAATCTTTTCGAGGATTGGCAAGTTGCTCTTTCTGTTGAAGCGAAAGCTACAGAGACGAGGGGAGTTTATGCTGCTGCAGAAAATTATCCAACCCACGCTGATCAACCTGCCATTACCCTCGTGGAAGCCTTCAGAAACCTGCAAGTTGAAGCAGAGGAATCACTTGAGAATGGACACATGGAACAAGAGTCTGAGCAGGTAGCTGAAGAAAATGGTCATGAAGAGAATGAAGAGGAACATGAAGAAGAAGAAGAAGAAGAAGAAGTGAATCAAGAAGAGGGAGTTGTTGTTGATGGAGACTCAACGGATGGTGGCGCTGTACTTGTTAATGGAAGTGAGGGTGAGGAAGAGTGGGGTACGAATAACAAAGGAAACCAACCAGCCTAA
Protein:  
MPLSLDIKRKFAQRSERVKSVDLHPTEPWILASLYSGTLCIWNYQTQVITKSFEVTDVPVRSAKFIPRKQWVVAGADDLHIRVYNYNTMDKVKVFEAHSDYIRCVAVHPTLPYVLSSSDDMLIKLWDWENGWACTQIFEGHSHYVMQVVFNPKDTNTFASASLDRSIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLDGHTHNVSAVCFHPELPIILTGSEDGTVRIWHATTYRLENTLNYALDRVWAIGYIKSSRRVVIGYDEGTIMVKLGREIPVASMDSSGKIIWAKHNEIQTANIKSLGAGYEVTDGERLPLAVKDLGTCDLYPQSLKHNPNARFVVVCGDGEYIIYTALAWRNRSFGSGLEFVWSSEGECAVRESSSKIKIFSKNFQERKSIRPTFSAEKIFGGTLLAMCSNDFICFYDWAECRLIQQIDVAVKNVYWAESGDLVAIASDTSFYILKYNRDLVSSHFDSGRPSDEEGVEDAFEVIHENDERVRTGIWVGDCFIYNNSSSKLNYCVGGEVTTMYHLDRPMYLLGYIANQSRVYLVDKEFNVIGYTLLLSLIEYKTLVMRGDLDKANEILPTIPKEQHNNVAHFLESRGMIEDALEIATDADYRFELAIQLGRLEIAKEIAEEVQSESKWKQLGELAMSSGKLQLAEDCMKYAVDLSGLLLLYSSLGDAEGVSKLACLAKEQGKNNVAFLCLFMLGRLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVALWRKDLSKVNSKAAESLADPEEYPNLFEDWQVALSVEAKATETRGVYAAAENYPTHADQPAITLVEAFRNLQVEAEESLENGHMEQESEQVAEENGHEENEEEHEEEEEEEEVNQEEGVVVDGDSTDGGAVLVNGSEGEEEWGTNNKGNQPA